refactor(php): remove redundant PHP_MODULE entries (#11362)

- Add dom and gmp to BASE_MODULES in setup_php()
- Remove modules already covered by BASE_MODULES (cli,common,bcmath,curl,dom,gd,gmp,intl,mbstring,readline,xml,zip)
- Remove modules already covered by EXTENDED_MODULES (mysql,sqlite3,pgsql,redis,imagick,bz2,apcu)
- Remove modules already covered by BUILTIN (ctype,exif,ffi,fileinfo,gettext,iconv,pdo,tokenizer)
- Affected: 31 install scripts, 12 ct scripts

ct/linkstack.sh

@@ -28,7 +28,7 @@ function update_script() {
     msg_error "No ${APP} Installation Found!"
     exit
   fi
-  PHP_VERSION="8.3" PHP_MODULE="sqlite3" PHP_APACHE="YES" setup_php
+  PHP_VERSION="8.3" PHP_APACHE="YES" setup_php
   msg_warn "LinkStack should be updated via the user interface."
   exit
 }